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Vacuum Solutions for Mass Spectrometry

Our expertise in mass spectrometry drives the development of our high-quality vacuum solutions – tailored for complex mass spectrometry systems to ensure precision, stability, and reliability.

The role of vacuum in mass spectrometry

In mass spectrometry, vacuum is crucial for allowing ions to travel through the system without interference from air molecules. Each stage of the instrument – from ion source to mass analyzer and detector – requires specific vacuum levels to ensure accurate ionization, effective mass separation, and minimal background noise.
Specific vacuum levels are required to ensure accurate ionization, effective mass separation, and minimal background noise.


Maintaining these distinct pressure stages is not a simple on-off function; each level must be precisely controlled. For instance, the ionization stage requires a carefully regulated pressure for efficient ion creation, while the mass analyzer depends on ultra-low pressures for uninterrupted ion movement.

High vacuum pumps are normally integrated within the system design, supported by external backing pumps. Gauges and intelligent controllers are critical to ensure the vacuum remains stable throughout operation, delivering the consistent performance users demand.

Vacuum solutions from Pfeiffer for your mass spectrometry application

From research labs to industrial environments: Pfeiffer Vacuum+Fab Solutions provides reliable, high-performance vacuum across all mass spectrometry techniques. Whether supporting multi-stage vacuum environments with our custom-engineered SplitFlow turbopumps or offering oil-free, quiet backing pumps for clean lab conditions: Our solutions deliver maximum sensitivity, uptime, and serviceability.

With over 500,000 turbopumps in operation and 70 years of experience in this technology, Pfeiffer is a trusted partner in ensuring stable, clean vacuum performance across every stage of your analytical process.

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Pfeiffer supports every mass spectrometry stage

Turbopumps (SplitFlow, HiPace):
  • Low vibration, high vacuum performance, customizable

Backing pumps:
  • Dry Scroll (HiScroll): clean, quiet, oil-free
  • Diaphragm (MVP): compact, maintenance-friendly
  • Rotary Vane (SmartVane, DuoVane): robust, high-capacity

Quick tip: The backing pump, placed beside your instrument, is designed for easy replacement by the user – keeping your system running with minimal downtime.

Control systems:
  • Gauges, valves, and intelligent controllers for precise vacuum management.

Learn more about selecting the ideal vacuum pump for your specific application in our FAQ section.

Mass spectrometry applications

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These systems require precise vacuum regardless of differences in sample preparation, whether analyzing volatile compounds or complex biological matrices.

Below is an overview of how different mass spectrometry techniques align with these general needs and where their specific challenges arise.

How does Gas Chromatography-Mass Spectrometry (GC-MS) work?

Used for volatile and semi-volatile compounds

GC-MS is a well-established method for analyzing volatile and semi-volatile compounds. The sample is first vaporized and carried through a gas chromatograph using an inert carrier gas, typically helium. Inside the chromatograph, components are separated based on their volatility and interactions with the stationary phase.

Once separated, the compounds enter the mass spectrometer, where they are typically ionized by electron impact. This process creates positive ions, which are then filtered in a mass analyzer, such as a quadrupole, to generate a mass spectrum, allowing for both identification and quantification of individual components.

GC-MS is commonly used in environmental monitoring, forensics, and pharmaceutical analysis due to its sensitivity and robustness.

How does Liquid Chromatography-Mass Spectrometry (LC-MS) work?

Ideal for complex liquid-phase samples.

LC-MS is used for more complex and non-volatile compounds, often found in biological samples or pharmaceuticals. The sample is dissolved in a liquid mobile phase and passed through a chromatographic column, where different compounds are separated via mobile and stationary phases before entering the mass spectrometer.

After separation, the compounds are ionized, typically using electrospray ionization (ESI), which allows the process to occur at atmospheric pressure. The resulting ions are then analyzed by the mass spectrometer – often using systems such as triple quadrupoles, ion traps, or time-of-flight (TOF) analyzers.

LC-MS is valued for its high selectivity, sensitivity, and ability to handle complex sample matrices, making it ideal for clinical research, metabolomics, and drug development.

How does Time-of-Flight Mass Spectrometry (TOF-MS) work?

Provides high-resolution analysis of large biomolecules.

TOF-MS measures the time ions take to travel through a flight tube after being accelerated by an electric field. Because all ions receive the same kinetic energy, their time of flight depends on their mass – lighter ions reach the detector faster than heavier ones.

Modern TOF systems often use reflectrons to enhance resolution, allowing more accurate measurement of mass-to-charge ratios. It is commonly used in combination with MALDI, ESI, or chromatography techniques, providing high-resolution data for proteomics, metabolomics, and material characterization.

How does Inductively Coupled Plasma-Mass Spectrometry (ICP-MS) work?

ICP-MS is specialized for the detection of trace elements and metals, even at very low concentrations. The sample, usually a liquid, is introduced into an argon plasma at temperatures between 5,000°C and 10,000°C, where it is fully ionized. The ions pass through sampler and skimmer cones into the vacuum system of the mass spectrometer.

Under high vacuum, the ions are focused and separated based on their mass-to-charge ratio.

ICP-MS is used extensively in environmental analysis, geology, and food safety, due to its ability to detect minute quantities of metals and perform isotope ratio analysis. It also supports advanced methods like laser ablation for solid samples and speciation analysis for differentiating chemical forms.

How does Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry (MALDI-MS) work?

Enables gentle ionization of large biological molecules.

MALDI-MS is designed for analyzing large biological molecules, such as proteins and peptides, without breaking them apart. The sample is mixed with a matrix a small organic compound that absorbs laser energy – and dried into a solid.

When the sample is exposed to a short laser pulse, the matrix helps desorb and ionize the analyte gently, minimizing fragmentation. These ions are then analyzed, often in a time-of-flight mass spectrometer, to determine their mass.

MALDI-MS is particularly suited for proteomics, biomarker discovery, and clinical applications, where preserving molecular integrity is key.

Vacuum requirements in mass spectrometers

Across all mass spectrometry techniques, certain demands on vacuum systems are universal. These systems must not only ensure the correct pressure conditions but also meet broader expectations that enhance lab efficiency and operational stability.

Key requirements for vacuum systems in mass spectrometry include:

Accurate measurement

Low vibration minimizes signal drift

Continuous operation

Energy-efficient, low-maintenance vacuum pumps support demanding workflows

Space optimization

Compact, smart systems integrate easily into instruments

Lab-friendly

Quiet, oil-free operation enhances lab environments

Learn more about mass spectrometry

What is mass spectrometry?

Mass spectrometry is a precise analytical technique used to identify, quantify, and analyze molecules by determining their mass-to-charge ratio. The process involves:

  • Ion formation: Molecules are converted into ions in an ion source.
  • Separation: Ions are separated in a mass analyzer under high vacuum.
  • Detection: The ion beam is measured, producing a mass spectrum that reveals detailed information about analyte molecules, including their structure and composition.

Accurate mass analysis depends on the reliable operation of the mass filter, which separates ions – even those with nearly the same mass – and enables the identification of unknown compounds.

Applications span pharmaceuticals, environmental analysis, forensics, materials science, and clinical research thanks to the mass spectromer's high sensitivity and ability to handle complex sample matrices.

Why is vacuum critical in mass spectrometry and how does it affect the mass analyzer?

Mass spectrometry critically depends on a well-maintained vacuum system to ensure accurate ion generation, transmission, separation, and detection. The vacuum enables:

  • Low pressure conditions which minimize collisions between ions and residual gas molecules. This allows ions to travel efficiently from the ion source to the detector without scattering or neutralization.
  • Stable ion trajectories essential for preserving signal intensity, ensuring precise mass separation, and achieving high mass resolution.
  • Reliable performance throughout key stages of the mass spectrometer, including the ion source, mass analyser, and detector.

A properly designed vacuum system is essential for maintaining high sensitivity, high resolution, and reproducibility. This is particularly important for gas-phase ions, such as singly charged ions, where even minor pressure fluctuations can affect ion stability and detection accuracy.

In positive ion mode (as well as in negative ion mode), stable vacuum conditions support accurate detection across a broad mass-to-charge (m/z) range. Furthermore, a consistent vacuum is crucial for the precise operation of the mass analyser or mass filter (e.g., quadrupole, time-of-flight, or Orbitrap), which separates ions based on their m/z values—including known and unknown compounds.

Overall, the vacuum ensures minimal ion loss, reduces background noise, and prevents unwanted chemical reactions, thereby maximizing the performance of the mass spectrometer.

What makes turbomolecular vacuum pump solutions from Pfeiffer ideal for different mass spectrometry applications?

Our turbopumps, including SplitFlow and HiPace models, are engineered for:

  • Stable high vacuum, essential for precise ion separation
  • Low vibration, critical for techniques like TOF-MS and MALDI-MS.
  • Customization, fitting specific instrument layouts and performance needs.

Whether your focus is on biological molecules, environmental samples, or complex clinical diagnostics, turbomolecular vacuum pump solutions from Pfeiffer provide the reliability and flexibility needed for consistent, high-sensitivity mass analysis.

How to choose the right backing pump for mass spectrometry?

The selection of a backing pump in mass spectrometry depends primarily on the required pumping speed and the specific application.

Low gas load (GC-MS, MALDI-MS):

High gas load (LC-MS, ICP-MS, TOF-MS):

Our backing pump solutions:
  • Diaphragm vacuum pumps (MVP series): ideal for systems with lower gas loads, offering oil-free, quiet operation
  • Dry scroll vacuum pumps (HiScroll): Designed for high flow rates, providing clean, oil-free vacuum with low noise (<47 dB[A]) and minimal vibration.
  • Rotary vane vacuum pumps (SmartVane, DuoVane): suitable for high-capacity needs where robustness and long service intervals are priorities.

No matter the application, Pfeiffer offers the right backing pump to match your specific vacuum requirements, ensuring reliable and efficient performance across all mass spectrometry techniques.

Does Pfeiffer offer mass spectrometers?

Yes, Pfeiffer offers compact mass spectrometry solutions, specifically designed for residual gas analysis (RGA) and process monitoring – distinct from full analytical mass spectrometers.

Our portfolio includes:

  • PrismaPro: high-sensitivity residual gas analysis
  • OmniStar: atmospheric pressure gas monitoring
  • ThermoStar: gas analysis during thermal processes
  • OmniGrade: precision gas analysis for clean rooms
  • Customized RGA systems: tailored solutions from our brand Dreebit


These tools are focused on specific diagnostic and monitoring tasks and are not designed for advanced applications like LC-MS, GC-MS, or TOF-MS. The primary role of Pfeiffer in broader mass spectrometry markets is supplying vacuum systems and components used within larger, more complex instruments.

Discover real insights and proven solutions

See how our vacuum technologies transform labs and mass spectrometry systems around the world. From achieving oil-free environments to selecting the perfect pump for your specific needs, our expert-led webinars and customer success stories reveal how you can optimize performance and reliability in your own setup.
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